Variant report

Variant	rs17033721
Chromosome Location	chr12:103725389-103725390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56654142	0.83[AMR][1000 genomes]
rs57605722	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58400732	0.83[AMR][1000 genomes]
rs61617103	0.83[AMR][1000 genomes]
rs7134076	0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs7980952	0.83[AMR][1000 genomes]
rs7981001	0.83[AMR][1000 genomes]
rs9669410	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455703	chr12:103692799-103818049	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv560037	chr12:103692799-103818049	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103707200-103786400	Weak transcription	Primary B cells from cord blood	blood
2	chr12:103712600-103734800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr12:103722200-103725800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:103723000-103725800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:103723200-103727600	Weak transcription	Fetal Brain Male	brain
6	chr12:103725200-103725600	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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