Variant report

Variant	rs17035135
Chromosome Location	chr12:104416176-104416177
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12318096	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1437503	1.00[YRI][hapmap]
rs17035297	1.00[MEX][hapmap]
rs4135063	0.83[YRI][hapmap]
rs4135081	0.83[YRI][hapmap]
rs55997300	0.92[AFR][1000 genomes]
rs58131303	1.00[EUR][1000 genomes]
rs58937971	0.89[EUR][1000 genomes]
rs6539118	1.00[EUR][1000 genomes]
rs6539119	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs7132060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7294791	1.00[EUR][1000 genomes]
rs7303182	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7306864	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7315363	0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7315396	1.00[CEU][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7960212	1.00[CEU][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560039	chr12:104177668-104455340	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv427922	chr12:104325583-104523096	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104406800-104417200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr12:104408800-104416200	Weak transcription	Fetal Lung	lung
3	chr12:104408800-104417400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr12:104408800-104428000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:104408800-104442200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr12:104409400-104416200	Weak transcription	Fetal Stomach	stomach
7	chr12:104409400-104421200	Weak transcription	Ovary	ovary
8	chr12:104410000-104417600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr12:104411800-104416400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr12:104415200-104435200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr12:104415400-104417800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr12:104416000-104416600	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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