Variant report

Variant	rs17035407
Chromosome Location	chr12:104764165-104764166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11112029	1.00[CEU][hapmap]
rs34195880	0.84[AMR][1000 genomes]
rs4576900	1.00[CEU][hapmap]
rs7303284	1.00[CEU][hapmap]
rs7957725	1.00[YRI][hapmap]
rs7958103	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899494	chr12:104561521-104806232	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1038609	chr12:104613847-104764981	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv541587	chr12:104613847-104764981	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104749000-104765800	Weak transcription	Thymus	Thymus
2	chr12:104749800-104769400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:104750400-104764800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr12:104753800-104765400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:104754400-104764800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr12:104757600-104765000	Weak transcription	Aorta	Aorta
7	chr12:104762000-104765000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr12:104763400-104764800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr12:104763600-104764600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr12:104763600-104764800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr12:104763600-104765200	Weak transcription	Primary T cells from cord blood	blood
12	chr12:104763800-104764200	Weak transcription	A549	lung
13	chr12:104763800-104764600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr12:104763800-104764800	Weak transcription	HUVEC	blood vessel
15	chr12:104763800-104765400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:104763800-104765400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr12:104763800-104768000	Enhancers	Placenta	Placenta
18	chr12:104764000-104764800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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