Variant report

Variant	rs17035736
Chromosome Location	chr4:106472904-106472905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr4:106472872-106473985	T-47D	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106452636..106454650-chr4:106472579..106474364,2	MCF-7	breast:

Variant related genes	Relation type
ARHGEF38	TF binding region
ENSG00000250922	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2866800	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28756792	1.00[EUR][1000 genomes]
rs6816893	0.93[YRI][hapmap];0.94[AFR][1000 genomes]
rs6823326	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1005011	chr4:106461690-106496019	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1013019	chr4:106461690-106501412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv524424	chr4:106466128-106491511	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv461610	chr4:106466128-106491511	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv595008	chr4:106466128-106491511	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv517837	chr4:106466588-106502513	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106470000-106473000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr4:106470000-106476600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:106471400-106473000	Enhancers	Fetal Intestine Large	intestine
4	chr4:106471400-106474200	Enhancers	HMEC	breast
5	chr4:106471600-106473400	Enhancers	A549	lung
6	chr4:106471600-106474000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:106471600-106474200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:106471600-106474200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:106471800-106473000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:106471800-106474200	Enhancers	NHEK	skin
11	chr4:106472000-106473000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:106472000-106473000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:106472000-106473400	Weak transcription	Gastric	stomach
14	chr4:106472200-106473000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr4:106472200-106477600	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr4:106472400-106473200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:106472600-106473000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
18	chr4:106472600-106473200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr4:106472600-106473400	Enhancers	Fetal Kidney	kidney
20	chr4:106472600-106473600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
21	chr4:106472600-106473600	Enhancers	HSMM	muscle
22	chr4:106472600-106473800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:106472800-106473200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
24	chr4:106472800-106473200	Flanking Active TSS	Stomach Mucosa	stomach
25	chr4:106472800-106473400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:106472800-106473400	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr4:106472800-106473400	Bivalent Enhancer	NHDF-Ad	bronchial
28	chr4:106472800-106473600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:106472800-106473600	Flanking Active TSS	Fetal Intestine Small	intestine
30	chr4:106472800-106474600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr4:106472800-106474800	Active TSS	Pancreatic Islets	Pancreatic Islet

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