Variant report

Variant	rs17036205
Chromosome Location	chr12:105091674-105091675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12228186	0.81[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2081808	0.81[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1050695	chr12:105000981-105125161	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv541589	chr12:105000981-105125161	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105067800-105096000	Weak transcription	K562	blood
2	chr12:105080400-105131800	Weak transcription	NHEK	skin
3	chr12:105083600-105103600	Weak transcription	Placenta	Placenta
4	chr12:105085000-105097800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr12:105086200-105096200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:105086400-105095600	Weak transcription	Fetal Heart	heart
7	chr12:105086400-105104400	Weak transcription	A549	lung
8	chr12:105086800-105103200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:105087800-105093800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr12:105087800-105094600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr12:105087800-105095600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr12:105087800-105096200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr12:105089000-105092200	Weak transcription	Small Intestine	intestine
14	chr12:105089000-105105600	Weak transcription	Esophagus	oesophagus
15	chr12:105089600-105092000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr12:105089600-105095400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr12:105089800-105091800	Weak transcription	Right Atrium	heart
18	chr12:105089800-105092200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:105089800-105092200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr12:105089800-105096200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr12:105089800-105097400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr12:105090000-105091800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr12:105090000-105091800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr12:105090000-105091800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr12:105090000-105091800	Weak transcription	Lung	lung
26	chr12:105090000-105092000	Weak transcription	Spleen	Spleen
27	chr12:105090000-105092200	Weak transcription	Thymus	Thymus
28	chr12:105090000-105092200	Weak transcription	HSMM	muscle
29	chr12:105090000-105092600	Weak transcription	HSMMtube	muscle
30	chr12:105090000-105093000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr12:105090000-105093000	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr12:105090000-105093400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr12:105090000-105093400	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr12:105090000-105095400	Weak transcription	Left Ventricle	heart
35	chr12:105090000-105095600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr12:105090000-105095600	Weak transcription	Right Ventricle	heart
37	chr12:105090000-105095800	Weak transcription	Fetal Stomach	stomach
38	chr12:105090000-105096000	Weak transcription	Adipose Nuclei	Adipose
39	chr12:105090000-105096200	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr12:105090000-105096400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr12:105090000-105096400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr12:105090000-105096400	Weak transcription	Primary T cells from cord blood	blood
43	chr12:105090000-105096400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr12:105090000-105096400	Weak transcription	Fetal Muscle Leg	muscle
45	chr12:105090000-105097400	Weak transcription	Fetal Kidney	kidney
46	chr12:105090000-105097800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr12:105090000-105102000	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr12:105090000-105104400	Weak transcription	Rectal Smooth Muscle	rectum
49	chr12:105090000-105104600	Weak transcription	Fetal Brain Female	brain
50	chr12:105090000-105104600	Weak transcription	HMEC	breast

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