Variant report

Variant	rs17036283
Chromosome Location	chr12:105113660-105113661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11112176	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11112178	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs12426228	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs17036237	1.00[CEU][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17036238	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60756405	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1050695	chr12:105000981-105125161	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv541589	chr12:105000981-105125161	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17036283	IFI6	trans	brain	seeQTL

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105080400-105131800	Weak transcription	NHEK	skin
2	chr12:105098400-105115800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:105098400-105116200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:105103000-105114200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:105104800-105116200	Weak transcription	A549	lung
6	chr12:105105200-105113800	Weak transcription	HSMM	muscle
7	chr12:105105800-105114000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr12:105106600-105120600	Weak transcription	Pancreas	Pancrea
9	chr12:105107000-105113800	Weak transcription	NHDF-Ad	bronchial
10	chr12:105107200-105114200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr12:105107200-105115000	Weak transcription	K562	blood
12	chr12:105107600-105114600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr12:105108000-105114400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr12:105108800-105117600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr12:105109600-105116000	Weak transcription	Fetal Intestine Large	intestine
16	chr12:105109800-105114000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr12:105109800-105116000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr12:105109800-105116200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr12:105110000-105114000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr12:105110600-105121000	Weak transcription	Gastric	stomach
21	chr12:105111200-105117600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr12:105111800-105114000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr12:105111800-105114000	Enhancers	Fetal Stomach	stomach
24	chr12:105111800-105114400	Enhancers	Fetal Brain Female	brain
25	chr12:105112000-105114000	Enhancers	Fetal Lung	lung
26	chr12:105112000-105114000	Enhancers	Fetal Muscle Leg	muscle
27	chr12:105112000-105114200	Enhancers	Fetal Thymus	thymus
28	chr12:105112000-105115400	Enhancers	Fetal Brain Male	brain
29	chr12:105112000-105115400	Enhancers	Lung	lung
30	chr12:105112200-105113800	Enhancers	Brain Germinal Matrix	brain
31	chr12:105112400-105113800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr12:105112400-105113800	Enhancers	Right Atrium	heart
33	chr12:105112400-105113800	Enhancers	NHLF	lung
34	chr12:105112400-105114000	Enhancers	Primary T cells fromperipheralblood	blood
35	chr12:105112400-105114800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr12:105112600-105113800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr12:105112600-105113800	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr12:105112600-105114200	Enhancers	Fetal Intestine Small	intestine
39	chr12:105112600-105114400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr12:105112600-105114600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr12:105112600-105115200	Enhancers	Spleen	Spleen
42	chr12:105112800-105113800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr12:105112800-105114000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr12:105112800-105114000	Enhancers	Right Ventricle	heart
45	chr12:105112800-105114000	Weak transcription	NH-A	brain
46	chr12:105112800-105115800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr12:105112800-105116000	Enhancers	Esophagus	oesophagus
48	chr12:105113000-105113800	Enhancers	Duodenum Mucosa	Duodenum
49	chr12:105113000-105114000	Enhancers	Primary B cells from peripheral blood	blood
50	chr12:105113000-105114000	Enhancers	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links