Variant report

Variant	rs17036687
Chromosome Location	chr12:105553112-105553113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1044607	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17036655	0.84[ASW][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17036660	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17036668	1.00[ASW][hapmap];0.90[LWK][hapmap];0.92[MKK][hapmap];0.86[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17036722	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4394911	0.93[AFR][1000 genomes]
rs58431410	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58670310	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59586998	0.95[AFR][1000 genomes]
rs59618886	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs60732733	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60887341	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60985863	0.82[AFR][1000 genomes]
rs7968154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832506	chr12:105461274-105637561	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	esv1826054	chr12:105505809-105568176	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1049296	chr12:105518764-105566079	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105505200-105559800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:105505200-105564000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr12:105505200-105567400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:105505200-105573000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr12:105505600-105573200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr12:105505800-105571400	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr12:105506400-105573000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:105506800-105568800	Strong transcription	Dnd41	blood
9	chr12:105506800-105572400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr12:105507000-105573200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr12:105507200-105571400	Strong transcription	Primary B cells from peripheral blood	blood
12	chr12:105507400-105565600	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr12:105507600-105571400	Strong transcription	HUVEC	blood vessel
14	chr12:105507600-105572800	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr12:105507800-105563800	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr12:105507800-105573200	Strong transcription	Placenta	Placenta
17	chr12:105508000-105565400	Strong transcription	Adipose Nuclei	Adipose
18	chr12:105508200-105572800	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr12:105508400-105562000	Strong transcription	Primary B cells from cord blood	blood
20	chr12:105508600-105573000	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr12:105508800-105565000	Strong transcription	Liver	Liver
22	chr12:105510000-105565200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr12:105513800-105567800	Weak transcription	Pancreas	Pancrea
24	chr12:105515200-105557600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr12:105517800-105555200	Weak transcription	Small Intestine	intestine
26	chr12:105518600-105573200	Strong transcription	HSMM	muscle
27	chr12:105519400-105558400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr12:105522600-105557600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr12:105522600-105586000	Weak transcription	Stomach Mucosa	stomach
30	chr12:105524600-105578200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr12:105525400-105583200	Weak transcription	Fetal Heart	heart
32	chr12:105527200-105565400	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr12:105529800-105571400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr12:105531200-105557200	Weak transcription	Gastric	stomach
35	chr12:105531200-105557400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr12:105532400-105577800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr12:105533200-105565200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr12:105534000-105556600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr12:105534600-105554000	Strong transcription	A549	lung
40	chr12:105537400-105559600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr12:105537400-105560400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr12:105538000-105553200	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr12:105539600-105555600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr12:105539800-105565800	Strong transcription	Osteobl	bone
45	chr12:105541400-105556600	Weak transcription	Fetal Brain Female	brain
46	chr12:105542200-105557800	Weak transcription	K562	blood
47	chr12:105543600-105556400	Strong transcription	HMEC	breast
48	chr12:105543800-105561600	Strong transcription	Fetal Thymus	thymus
49	chr12:105544600-105557000	Weak transcription	Brain Hippocampus Middle	brain
50	chr12:105544600-105557400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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