Variant report

Variant	rs17036784
Chromosome Location	chr2:47881935-47881936
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:47868722..47870543-chr2:47880865..47882714,2	MCF-7	breast:
2	chr2:47875863..47878588-chr2:47880376..47882321,2	K562	blood:
3	chr2:47857552..47860934-chr2:47879482..47882207,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2881828	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56880609	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57247657	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60010947	0.83[AFR][1000 genomes]
rs60991393	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72872896	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72872897	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72875007	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72875008	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998314	chr2:47720420-47959168	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv817599	chr2:47738456-47961099	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv457396	chr2:47866133-47956844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv581771	chr2:47866133-47956844	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv581772	chr2:47874713-47892526	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:47879600-47882200	Enhancers	Pancreas	Pancrea
2	chr2:47880200-47885800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:47880400-47882000	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr2:47880800-47882000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:47880800-47882200	Enhancers	Brain Angular Gyrus	brain
6	chr2:47880800-47883400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:47880800-47884000	Enhancers	Primary B cells from peripheral blood	blood
8	chr2:47881000-47882000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:47881000-47882000	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr2:47881000-47882000	Enhancers	Spleen	Spleen
11	chr2:47881000-47882200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr2:47881000-47882200	Enhancers	Gastric	stomach
13	chr2:47881000-47882200	Enhancers	HMEC	breast
14	chr2:47881000-47882600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:47881000-47882600	Enhancers	Fetal Muscle Trunk	muscle
16	chr2:47881000-47882600	Enhancers	Ovary	ovary
17	chr2:47881000-47883400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr2:47881000-47883600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr2:47881000-47884000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr2:47881200-47882000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:47881200-47882000	Enhancers	Fetal Intestine Large	intestine
22	chr2:47881200-47882000	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr2:47881200-47882000	Enhancers	NHEK	skin
24	chr2:47881200-47882200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:47881200-47882200	Enhancers	Duodenum Mucosa	Duodenum
26	chr2:47881200-47882200	Enhancers	GM12878-XiMat	blood
27	chr2:47881200-47882200	Enhancers	NH-A	brain
28	chr2:47881200-47882400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr2:47881200-47882800	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr2:47881200-47882800	Enhancers	Lung	lung
31	chr2:47881200-47883000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr2:47881200-47883000	Enhancers	H9 Cell Line	embryonic stem cell
33	chr2:47881200-47883000	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr2:47881200-47883200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr2:47881200-47883200	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr2:47881200-47883200	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr2:47881200-47883200	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr2:47881200-47883200	Enhancers	Primary B cells from cord blood	blood
39	chr2:47881200-47883400	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr2:47881400-47882000	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr2:47881400-47882000	Enhancers	Brain Substantia Nigra	brain
42	chr2:47881400-47882000	Enhancers	Stomach Mucosa	stomach
43	chr2:47881400-47882200	Enhancers	Brain Hippocampus Middle	brain
44	chr2:47881400-47882400	Enhancers	Fetal Intestine Small	intestine
45	chr2:47881400-47882800	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr2:47881400-47885200	Enhancers	Placenta Amnion	Placenta Amnion
47	chr2:47881800-47882000	Bivalent Enhancer	HepG2	liver
48	chr2:47881800-47882200	Enhancers	Brain Anterior Caudate	brain
49	chr2:47881800-47882200	Enhancers	K562	blood
50	chr2:47881800-47882600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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