Variant report

Variant	rs17036865
Chromosome Location	chr12:105647795-105647796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105646719..105649373-chr12:105657582..105659204,2	K562	blood:
2	chr12:105628268..105630407-chr12:105646094..105648967,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235162	Chromatin interaction
ENSG00000136044	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17036813	0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17036863	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57553834	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59720624	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7299521	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7316399	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455704	chr12:105583877-105651356	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
2	nsv560053	chr12:105583877-105651356	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
3	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105645800-105648200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr12:105646200-105647800	Enhancers	NHDF-Ad	bronchial
3	chr12:105646400-105651000	Enhancers	Osteobl	bone
4	chr12:105647000-105647800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr12:105647000-105647800	Enhancers	HSMM	muscle
6	chr12:105647000-105648200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr12:105647000-105649600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr12:105647000-105650000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr12:105647000-105652600	Enhancers	HSMMtube	muscle
10	chr12:105647000-105653400	Enhancers	NHLF	lung
11	chr12:105647200-105647800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr12:105647200-105647800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr12:105647200-105647800	Enhancers	HMEC	breast
14	chr12:105647200-105647800	Enhancers	NHEK	skin
15	chr12:105647200-105651000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr12:105647200-105651800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr12:105647400-105647800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr12:105647400-105647800	Enhancers	NH-A	brain
19	chr12:105647400-105648000	Enhancers	Stomach Mucosa	stomach
20	chr12:105647400-105648000	Bivalent Enhancer	K562	blood
21	chr12:105647400-105648200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr12:105647400-105648200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr12:105647400-105648200	Enhancers	Gastric	stomach
24	chr12:105647400-105649400	Enhancers	HUVEC	blood vessel
25	chr12:105647400-105653400	Enhancers	Placenta Amnion	Placenta Amnion
26	chr12:105647600-105647800	ZNF genes & repeats	Aorta	Aorta
27	chr12:105647600-105648000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr12:105647600-105648000	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr12:105647600-105648000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr12:105647600-105648200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr12:105647600-105648200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr12:105647600-105648200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr12:105647600-105648200	Enhancers	Placenta	Placenta
34	chr12:105647600-105648200	Flanking Active TSS	Hela-S3	cervix
35	chr12:105647600-105648400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr12:105647600-105648400	Flanking Active TSS	A549	lung
37	chr12:105647600-105648600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links