Variant report

Variant	rs17038073
Chromosome Location	chr4:160282911-160282912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:160279549..160283118-chr4:160285686..160287785,3	MCF-7	breast:
2	chr4:160274137..160276479-chr4:160281764..160285889,4	K562	blood:
3	chr4:160282094..160284235-chr4:160295172..160296934,2	K562	blood:
4	chr4:160282232..160283919-chr4:160283974..160285950,2	K562	blood:

Variant related genes	Relation type
ENSG00000248552	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11934846	0.83[AFR][1000 genomes]
rs17038060	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7673030	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022771	chr4:160188801-160324683	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160237000-160284400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:160250000-160283400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:160250000-160284400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:160250400-160285200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:160250800-160284600	Strong transcription	Liver	Liver
6	chr4:160258000-160283200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr4:160259200-160283000	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr4:160259400-160283000	Strong transcription	Fetal Intestine Large	intestine
9	chr4:160264400-160283000	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr4:160264600-160283200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:160264600-160284800	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr4:160266800-160287600	Weak transcription	Psoas Muscle	Psoas
13	chr4:160270600-160283000	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr4:160271000-160286400	Weak transcription	Small Intestine	intestine
15	chr4:160271200-160283000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:160271600-160283600	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr4:160271600-160284200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:160272000-160283200	Strong transcription	Primary T cells from cord blood	blood
19	chr4:160273600-160283000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr4:160274200-160289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr4:160275000-160283200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr4:160275200-160287800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr4:160275200-160303800	Weak transcription	Right Atrium	heart
24	chr4:160275400-160288000	Weak transcription	A549	lung
25	chr4:160276800-160283600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr4:160277600-160283000	Weak transcription	Colonic Mucosa	Colon
27	chr4:160279600-160283400	Weak transcription	Ovary	ovary
28	chr4:160279800-160283000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr4:160280200-160283000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr4:160280200-160283000	Strong transcription	Adipose Nuclei	Adipose
31	chr4:160280200-160284800	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr4:160280200-160286400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr4:160280200-160289800	Weak transcription	Spleen	Spleen
34	chr4:160280200-160290800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr4:160280200-160295200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr4:160280400-160283600	Weak transcription	Fetal Stomach	stomach
37	chr4:160280400-160286400	Weak transcription	Fetal Intestine Small	intestine
38	chr4:160280600-160283400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr4:160280600-160283400	Weak transcription	Thymus	Thymus
40	chr4:160280600-160283600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr4:160280600-160286200	Weak transcription	Esophagus	oesophagus
42	chr4:160280600-160286200	Weak transcription	Gastric	stomach
43	chr4:160280600-160288000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr4:160280600-160288200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr4:160280600-160290200	Weak transcription	Pancreas	Pancrea
46	chr4:160280800-160283800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr4:160280800-160285400	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr4:160280800-160286800	Weak transcription	Colon Smooth Muscle	Colon
49	chr4:160280800-160287400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr4:160280800-160287600	Weak transcription	HepG2	liver

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