Variant report

Variant	rs17038863
Chromosome Location	chr2:37283418-37283419
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17020185	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4648246	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv873879	chr2:37200033-37299145	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv581472	chr2:37235324-37291320	Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37209000-37290200	Weak transcription	Small Intestine	intestine
2	chr2:37221000-37307600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:37223400-37300400	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr2:37240400-37304800	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr2:37240600-37306000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr2:37240800-37306400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr2:37240800-37307000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr2:37241200-37306000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr2:37241400-37299600	Strong transcription	Primary B cells from peripheral blood	blood
10	chr2:37242000-37287000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:37242200-37305800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:37248800-37290200	Weak transcription	Psoas Muscle	Psoas
13	chr2:37249000-37291800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr2:37249000-37291800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr2:37253800-37289600	Weak transcription	Spleen	Spleen
16	chr2:37253800-37291000	Weak transcription	Aorta	Aorta
17	chr2:37253800-37310200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr2:37255200-37284400	Weak transcription	Ovary	ovary
19	chr2:37258400-37291800	Weak transcription	Esophagus	oesophagus
20	chr2:37263600-37285000	Weak transcription	Fetal Brain Male	brain
21	chr2:37263800-37289400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:37266200-37291800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:37268600-37284000	Weak transcription	Stomach Mucosa	stomach
24	chr2:37272400-37306400	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr2:37272600-37293800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr2:37272600-37299400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr2:37272600-37309800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr2:37274200-37308800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr2:37274400-37299200	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr2:37274400-37309600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:37274800-37286400	Strong transcription	Primary B cells from cord blood	blood
32	chr2:37274800-37286400	Strong transcription	Fetal Thymus	thymus
33	chr2:37275000-37294800	Strong transcription	Duodenum Mucosa	Duodenum
34	chr2:37275200-37285600	Strong transcription	Primary T cells from cord blood	blood
35	chr2:37275200-37300200	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr2:37275200-37307000	Strong transcription	Adipose Nuclei	Adipose
37	chr2:37275400-37299400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr2:37275400-37309200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr2:37275600-37287400	Strong transcription	Placenta	Placenta
40	chr2:37276400-37296800	Strong transcription	Osteobl	bone
41	chr2:37276600-37287600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr2:37276800-37283800	Strong transcription	Stomach Smooth Muscle	stomach
43	chr2:37276800-37288000	Strong transcription	Fetal Muscle Trunk	muscle
44	chr2:37276800-37299400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr2:37277000-37291800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr2:37277200-37286200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr2:37277600-37299400	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr2:37278000-37299600	Strong transcription	Liver	Liver
49	chr2:37278400-37286600	Weak transcription	Fetal Stomach	stomach
50	chr2:37278600-37286000	Strong transcription	Dnd41	blood

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