Variant report

Variant	rs17040480
Chromosome Location	chr2:115864825-115864826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11896753	0.91[ASN][1000 genomes]
rs1396936	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17043946	0.89[ASN][1000 genomes]
rs17043949	0.89[ASN][1000 genomes]
rs17043951	0.89[ASN][1000 genomes]
rs17043962	0.89[ASN][1000 genomes]
rs17044079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17044096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56668819	0.89[ASN][1000 genomes]
rs57230110	0.89[ASN][1000 genomes]
rs58157894	0.89[ASN][1000 genomes]
rs60995351	0.89[ASN][1000 genomes]
rs72949792	0.91[ASN][1000 genomes]
rs72949797	0.91[ASN][1000 genomes]
rs72949799	0.91[ASN][1000 genomes]
rs7609097	0.91[ASN][1000 genomes]
rs8179808	0.88[ASN][1000 genomes]
rs966858	0.89[ASN][1000 genomes]
rs966859	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115862400-115871600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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