Variant report

Variant	rs17040869
Chromosome Location	chr4:110741635-110741636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:110739041..110741927-chr4:110742062..110743764,2	MCF-7	breast:
2	chr4:110741410..110743630-chr4:110750496..110752725,2	K562	blood:
3	chr4:110741009..110743541-chr4:110749653..110751404,2	MCF-7	breast:
4	chr4:110735461..110738460-chr4:110741089..110745272,5	MCF-7	breast:
5	chr4:110619077..110621790-chr4:110741632..110744275,3	K562	blood:
6	chr4:110683644..110685580-chr4:110741467..110744282,2	K562	blood:
7	chr4:110739239..110741975-chr4:110896217..110899898,3	MCF-7	breast:
8	chr4:110684027..110686689-chr4:110739417..110742962,3	K562	blood:
9	chr4:110736073..110738614-chr4:110739183..110744192,10	MCF-7	breast:
10	chr4:110740840..110743631-chr4:110750092..110752586,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000205403	Chromatin interaction
ENSG00000109534	Chromatin interaction
ENSG00000272795	Chromatin interaction
ENSG00000138798	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12508007	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12645244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17040920	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61744555	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61747002	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110737600-110743400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:110737600-110745400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:110737600-110745800	Weak transcription	Spleen	Spleen
4	chr4:110737600-110770600	Weak transcription	Aorta	Aorta
5	chr4:110737800-110741800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr4:110737800-110743400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:110737800-110746400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:110737800-110746600	Weak transcription	Esophagus	oesophagus
9	chr4:110737800-110748000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:110737800-110753200	Weak transcription	Lung	lung
11	chr4:110738000-110741800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:110738000-110743400	Weak transcription	Fetal Stomach	stomach
13	chr4:110738000-110747200	Weak transcription	Gastric	stomach
14	chr4:110738000-110748400	Weak transcription	Small Intestine	intestine
15	chr4:110738000-110760800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr4:110738200-110742200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:110738200-110743400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr4:110738200-110743400	Weak transcription	Thymus	Thymus
19	chr4:110738200-110746400	Weak transcription	Colonic Mucosa	Colon
20	chr4:110738200-110747800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:110738400-110741800	Weak transcription	Brain Hippocampus Middle	brain
22	chr4:110738400-110742000	Weak transcription	HSMMtube	muscle
23	chr4:110738400-110743200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr4:110738400-110743400	Weak transcription	Pancreas	Pancrea
25	chr4:110738400-110743400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr4:110738400-110748000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr4:110738400-110748000	Weak transcription	Ovary	ovary
28	chr4:110738400-110748400	Weak transcription	Right Ventricle	heart
29	chr4:110738400-110748600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:110738400-110757200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr4:110738600-110743600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr4:110738600-110746800	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr4:110738600-110747000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr4:110738600-110747600	Weak transcription	Fetal Heart	heart
35	chr4:110738600-110748400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr4:110738800-110741800	Weak transcription	Brain Anterior Caudate	brain
37	chr4:110738800-110742600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr4:110738800-110742600	Strong transcription	Psoas Muscle	Psoas
39	chr4:110738800-110744600	Strong transcription	A549	lung
40	chr4:110738800-110746800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:110738800-110746800	Strong transcription	Adipose Nuclei	Adipose
42	chr4:110738800-110747000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr4:110738800-110747000	Strong transcription	Fetal Thymus	thymus
44	chr4:110738800-110747000	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr4:110738800-110747000	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr4:110738800-110747200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr4:110738800-110747200	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr4:110738800-110747200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr4:110738800-110747600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr4:110738800-110748600	Strong transcription	HUES64 Cell Line	embryonic stem cell

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