Variant report

Variant	rs17041304
Chromosome Location	chr4:110977348-110977349
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110975742..110978325-chr4:111114327..111116572,2	K562	blood:
2	chr4:110972268..110974968-chr4:110975889..110979455,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17041278	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17041284	0.94[ASN][1000 genomes]
rs17041301	0.88[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs17041309	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs7665258	0.89[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv595145	chr4:110969572-110982248	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110964600-110981000	Weak transcription	Adipose Nuclei	Adipose
2	chr4:110964600-110981800	Weak transcription	Brain Anterior Caudate	brain
3	chr4:110964600-111004000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:110964800-110982800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:110965000-110982000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:110965200-110986600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:110965400-110994200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:110966800-110982000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:110967600-110980000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:110968600-110980800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:110970800-110995800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:110971200-110980200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr4:110971800-110981200	Weak transcription	NHLF	lung
14	chr4:110971800-110981600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr4:110971800-110992800	Weak transcription	Fetal Stomach	stomach
16	chr4:110972200-110981000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:110972600-110980600	Weak transcription	HUVEC	blood vessel
18	chr4:110972800-110977800	Weak transcription	HSMM	muscle
19	chr4:110972800-110981400	Weak transcription	Gastric	stomach
20	chr4:110973000-110978200	Weak transcription	Fetal Brain Female	brain
21	chr4:110973000-110980800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr4:110973000-110981400	Weak transcription	Esophagus	oesophagus
23	chr4:110973000-110991000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr4:110973000-111009200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr4:110973200-110977800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:110973200-110979600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr4:110973200-110979600	Weak transcription	HMEC	breast
28	chr4:110973400-110980400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr4:110973400-110982200	Weak transcription	K562	blood
30	chr4:110973400-110992400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr4:110974400-110990600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr4:110974600-110992600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr4:110975800-110977400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr4:110976000-110977400	Enhancers	HepG2	liver
35	chr4:110976000-110978400	Enhancers	Liver	Liver
36	chr4:110976000-110981400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr4:110976200-110977400	Enhancers	Brain Cingulate Gyrus	brain
38	chr4:110976200-110977400	Enhancers	Pancreatic Islets	Pancreatic Islet
39	chr4:110976200-110978400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:110976200-110981000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr4:110976400-110978200	Enhancers	Brain Substantia Nigra	brain
42	chr4:110976600-110977600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr4:110976600-110977600	Enhancers	Osteobl	bone
44	chr4:110976600-110977800	Weak transcription	NHEK	skin
45	chr4:110976800-110980200	Weak transcription	Small Intestine	intestine
46	chr4:110976800-110981200	Weak transcription	Fetal Thymus	thymus
47	chr4:110976800-110981400	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr4:110977000-110978000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:110977000-110978000	Weak transcription	Brain Hippocampus Middle	brain
50	chr4:110977000-110979200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links