Variant report

Variant	rs17041572
Chromosome Location	chr12:106438975-106438976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106431203..106432855-chr12:106437719..106439340,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57752342	1.00[EUR][1000 genomes]
rs58706987	0.97[EUR][1000 genomes]
rs60117100	0.97[EUR][1000 genomes]
rs73395291	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106415800-106456400	Weak transcription	Aorta	Aorta
2	chr12:106433400-106440400	Weak transcription	Brain Hippocampus Middle	brain
3	chr12:106433400-106444400	Weak transcription	Right Ventricle	heart
4	chr12:106433800-106443400	Weak transcription	Gastric	stomach
5	chr12:106434600-106439400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:106434600-106445400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:106436200-106440600	Weak transcription	Fetal Brain Male	brain
8	chr12:106438200-106439400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:106438400-106439600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:106438400-106440600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr12:106438400-106440600	Genic enhancers	HSMMtube	muscle
12	chr12:106438600-106439000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr12:106438600-106439000	Enhancers	Fetal Lung	lung
14	chr12:106438600-106439200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr12:106438600-106439200	Enhancers	NH-A	brain
16	chr12:106438600-106439400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr12:106438600-106439400	Enhancers	Fetal Brain Female	brain
18	chr12:106438600-106439400	Enhancers	A549	lung
19	chr12:106438600-106439600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr12:106438600-106439600	Enhancers	Left Ventricle	heart
21	chr12:106438600-106439600	Enhancers	HSMM	muscle
22	chr12:106438600-106439800	Enhancers	NHDF-Ad	bronchial
23	chr12:106438600-106439800	Enhancers	Osteobl	bone
24	chr12:106438600-106440600	Enhancers	Fetal Heart	heart
25	chr12:106438800-106439000	Enhancers	Brain Angular Gyrus	brain
26	chr12:106438800-106442600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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