Variant report

Variant	rs17042014
Chromosome Location	chr1:211725665-211725666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211720646..211723922-chr1:211723928..211727458,3	MCF-7	breast:
2	chr1:211687336..211689241-chr1:211725322..211726983,2	MCF-7	breast:
3	chr1:211721919..211725737-chr1:211730323..211735223,5	MCF-7	breast:
4	chr1:211715199..211717091-chr1:211724445..211727190,2	K562	blood:
5	chr1:211723836..211726328-chr1:211802302..211805262,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6666412	0.87[EUR][1000 genomes]
rs73071186	0.87[EUR][1000 genomes]
rs73071192	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211720200-211726000	Enhancers	Fetal Intestine Small	intestine
2	chr1:211720800-211726000	Enhancers	Fetal Intestine Large	intestine
3	chr1:211724400-211728600	Weak transcription	K562	blood
4	chr1:211725000-211725800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr1:211725000-211726000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:211725000-211726000	Flanking Active TSS	Hela-S3	cervix
7	chr1:211725000-211726000	Enhancers	HMEC	breast
8	chr1:211725000-211726800	Enhancers	Placenta	Placenta
9	chr1:211725200-211725800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr1:211725200-211725800	Enhancers	Fetal Stomach	stomach
11	chr1:211725200-211726000	Enhancers	Fetal Lung	lung
12	chr1:211725400-211726000	Bivalent Enhancer	HepG2	liver
13	chr1:211725400-211726200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:211725400-211728000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:211725600-211725800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:211725600-211725800	Enhancers	Colon Smooth Muscle	Colon
17	chr1:211725600-211726000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:211725600-211726000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:211725600-211726000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:211725600-211726000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:211725600-211726000	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr1:211725600-211726000	Enhancers	Osteobl	bone
23	chr1:211725600-211726200	Enhancers	HUVEC	blood vessel

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