Variant report

Variant	rs17042883
Chromosome Location	chr2:21917088-21917089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10495717	0.81[ASN][1000 genomes]
rs17042879	0.81[ASN][1000 genomes]
rs17042892	0.81[ASN][1000 genomes]
rs17042895	1.00[ASN][1000 genomes]
rs57902860	1.00[ASN][1000 genomes]
rs59801998	0.81[ASN][1000 genomes]
rs61350387	0.83[ASN][1000 genomes]
rs6547844	0.81[ASN][1000 genomes]
rs6719475	1.00[JPT][hapmap]
rs6722624	0.81[ASN][1000 genomes]
rs6722626	0.81[ASN][1000 genomes]
rs6726088	0.81[ASN][1000 genomes]
rs6731548	0.83[ASN][1000 genomes]
rs6759533	1.00[JPT][hapmap]
rs73919133	0.81[ASN][1000 genomes]
rs7579890	1.00[ASN][1000 genomes]
rs7587435	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3406784	chr2:21805088-22160765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1004702	chr2:21874266-21934331	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv581171	chr2:21897192-21952204	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv430602	chr2:21910981-22221206	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21915600-21918000	Enhancers	Fetal Brain Male	brain
2	chr2:21916800-21917800	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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