Variant report

Variant	rs17043202
Chromosome Location	chr2:114116536-114116537
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4088308	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757826	chr2:114074949-114253780	Enhancers Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759085	chr2:114074949-114428678	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114106800-114129800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:114110600-114124600	Weak transcription	A549	lung
3	chr2:114114000-114116600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:114114400-114122600	Weak transcription	Fetal Intestine Small	intestine
5	chr2:114114800-114117400	Enhancers	NHEK	skin
6	chr2:114115000-114117600	Enhancers	HMEC	breast
7	chr2:114115200-114117000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:114115400-114117400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:114115800-114120000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:114116000-114116800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:114116000-114116800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr2:114116000-114116800	Enhancers	Fetal Muscle Leg	muscle
13	chr2:114116000-114116800	Enhancers	HSMM	muscle
14	chr2:114116000-114117000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:114116000-114117000	Enhancers	NH-A	brain
16	chr2:114116200-114116600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr2:114116200-114116800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:114116200-114116800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr2:114116200-114117400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:114116400-114116800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr2:114116400-114117000	Enhancers	HSMMtube	muscle

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