Variant report

Variant	rs1704369
Chromosome Location	chr15:42302119-42302120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11632711	0.92[YRI][hapmap];0.94[AFR][1000 genomes]
rs12438496	0.90[EUR][1000 genomes]
rs12438854	0.89[EUR][1000 genomes]
rs12439677	0.90[EUR][1000 genomes]
rs12439687	0.92[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs12441360	0.90[EUR][1000 genomes]
rs12442934	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs1668568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1704360	0.80[YRI][hapmap]
rs1704363	0.80[YRI][hapmap]
rs1704364	1.00[CEU][hapmap];0.89[YRI][hapmap];0.96[EUR][1000 genomes]
rs1704365	1.00[CEU][hapmap];0.89[YRI][hapmap];0.96[EUR][1000 genomes]
rs2598464	0.80[YRI][hapmap]
rs4924599	0.89[EUR][1000 genomes]
rs4924600	0.92[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs4924601	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs9919986	0.90[EUR][1000 genomes]
rs9920824	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1038933	chr15:42138456-42309087	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
4	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv1054728	chr15:42177772-42310009	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42288200-42303400	Weak transcription	Pancreas	Pancrea
2	chr15:42290400-42310400	Weak transcription	Right Atrium	heart
3	chr15:42295000-42302600	Weak transcription	Right Ventricle	heart
4	chr15:42297800-42303400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:42300400-42303200	Weak transcription	Lung	lung
6	chr15:42301800-42302200	Enhancers	Esophagus	oesophagus
7	chr15:42301800-42306000	Enhancers	Fetal Intestine Small	intestine
8	chr15:42302000-42302800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:42302000-42303200	Enhancers	Hela-S3	cervix
10	chr15:42302000-42304600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr15:42302000-42305400	Enhancers	Placenta	Placenta
12	chr15:42302000-42306000	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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