Variant report

Variant	rs17045069
Chromosome Location	chr2:53877608-53877609
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10490472	0.83[AMR][1000 genomes]
rs17045109	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17045123	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17045139	0.83[AMR][1000 genomes]
rs17045239	0.83[AMR][1000 genomes]
rs17045262	0.83[AMR][1000 genomes]
rs17045286	0.83[AMR][1000 genomes]
rs2287339	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2287342	0.90[GIH][hapmap]
rs2287346	1.00[ASW][hapmap];0.90[GIH][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs2287347	0.87[GIH][hapmap]
rs3213768	0.87[GIH][hapmap];0.83[AMR][1000 genomes]
rs3755114	0.90[GIH][hapmap];0.83[AMR][1000 genomes]
rs3755115	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3755116	0.83[AMR][1000 genomes]
rs3755119	0.83[AMR][1000 genomes]
rs3770391	0.83[AMR][1000 genomes]
rs3770396	0.94[GIH][hapmap];0.83[AMR][1000 genomes]
rs59951261	0.83[AMR][1000 genomes]
rs60972886	0.83[AMR][1000 genomes]
rs6545368	0.84[GIH][hapmap]
rs997643	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916267	chr2:53747525-53955999	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv874147	chr2:53772561-53886799	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv984439	chr2:53861720-53955437	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1003263	chr2:53863287-54055359	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv535720	chr2:53863287-54055359	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53874200-53935000	Weak transcription	Pancreas	Pancrea

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