Variant report

Variant	rs17045085
Chromosome Location	chr1:217225792-217225793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1416528	0.83[EUR][1000 genomes]
rs17045075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17045087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17045097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6682798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6685662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428610	chr1:217143317-217307243	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv549205	chr1:217165548-217270219	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217204800-217226000	Weak transcription	Fetal Kidney	kidney
2	chr1:217213400-217240600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:217215400-217226600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:217217000-217226600	Weak transcription	Brain Anterior Caudate	brain
5	chr1:217218000-217227000	Weak transcription	Fetal Heart	heart
6	chr1:217221800-217251400	Weak transcription	Left Ventricle	heart
7	chr1:217223200-217250000	Weak transcription	Psoas Muscle	Psoas
8	chr1:217223600-217226000	Weak transcription	Fetal Muscle Leg	muscle
9	chr1:217224400-217226000	Weak transcription	Fetal Intestine Small	intestine
10	chr1:217224400-217226200	Weak transcription	Fetal Intestine Large	intestine
11	chr1:217224800-217225800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:217224800-217226400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:217224800-217226400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:217224800-217226400	Enhancers	NHEK	skin
15	chr1:217225200-217226200	Enhancers	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links