Variant report

Variant	rs17045089
Chromosome Location	chr1:217227826-217227827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10863287	1.00[CEU][hapmap]
rs11805936	0.90[ASN][1000 genomes]
rs12401426	1.00[JPT][hapmap]
rs12404767	1.00[JPT][hapmap]
rs1416535	1.00[CEU][hapmap]
rs2377361	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6656656	1.00[CEU][hapmap]
rs7516529	1.00[CEU][hapmap]
rs7523193	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428610	chr1:217143317-217307243	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv549205	chr1:217165548-217270219	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217213400-217240600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:217221800-217251400	Weak transcription	Left Ventricle	heart
3	chr1:217223200-217250000	Weak transcription	Psoas Muscle	Psoas
4	chr1:217226400-217235000	Weak transcription	Fetal Kidney	kidney
5	chr1:217226800-217228000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:217226800-217228400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:217227000-217228200	Enhancers	Fetal Heart	heart
8	chr1:217227200-217228400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:217227800-217231200	Weak transcription	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links