The 2.0 version of rSNPBase

Variant report

Variant rs17045392
Chromosome Location chr2:54143786-54143787
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54087000-54168000 Strong transcription Monocytes-CD14+_RO01746 blood
2 chr2:54087200-54176000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
3 chr2:54087600-54187600 Weak transcription Stomach Mucosa stomach
4 chr2:54108200-54177400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr2:54109800-54179800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
6 chr2:54113200-54144600 Weak transcription ES-WA7 Cell Line embryonic stem cell
7 chr2:54122200-54172800 Weak transcription Pancreatic Islets Pancreatic Islet
8 chr2:54124400-54159200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
9 chr2:54126200-54167600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr2:54127000-54156000 Weak transcription Pancreas Pancrea
11 chr2:54128000-54145400 Weak transcription Ovary ovary
12 chr2:54128800-54144600 Weak transcription Fetal Brain Male brain
13 chr2:54129000-54157600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr2:54130400-54146600 Weak transcription Small Intestine intestine
15 chr2:54133000-54145400 Weak transcription Brain Germinal Matrix brain
16 chr2:54133000-54151800 Weak transcription Psoas Muscle Psoas
17 chr2:54133000-54153000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
18 chr2:54133000-54157800 Weak transcription Colonic Mucosa Colon
19 chr2:54133200-54154800 Weak transcription Aorta Aorta
20 chr2:54133400-54145600 Weak transcription Esophagus oesophagus
21 chr2:54133400-54150800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr2:54133400-54151800 Weak transcription Lung lung
23 chr2:54133400-54154800 Weak transcription Spleen Spleen
24 chr2:54133600-54151800 Weak transcription Placenta Amnion Placenta Amnion
25 chr2:54133600-54152000 Weak transcription Right Ventricle heart
26 chr2:54133800-54145400 Weak transcription Thymus Thymus
27 chr2:54135000-54144600 Weak transcription Brain Substantia Nigra brain
28 chr2:54135000-54148000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
29 chr2:54135000-54149400 Weak transcription NHLF lung
30 chr2:54135200-54144600 Weak transcription Brain Angular Gyrus brain
31 chr2:54135200-54145200 Weak transcription Fetal Brain Female brain
32 chr2:54135200-54146200 Weak transcription iPS-15b Cell Line embryonic stem cell
33 chr2:54135200-54147400 Weak transcription Rectal Smooth Muscle rectum
34 chr2:54135400-54146200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr2:54135600-54144600 Weak transcription H1 Cell Line embryonic stem cell
36 chr2:54135600-54145000 Weak transcription Colon Smooth Muscle Colon
37 chr2:54135600-54145200 Weak transcription Brain Hippocampus Middle brain
38 chr2:54135600-54145600 Weak transcription ES-I3 Cell Line embryonic stem cell
39 chr2:54135600-54146600 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr2:54135600-54172200 Weak transcription Fetal Heart heart
41 chr2:54136000-54144600 Weak transcription K562 blood
42 chr2:54137200-54144400 Weak transcription Primary neutrophils fromperipheralblood blood
43 chr2:54137200-54144600 Weak transcription Brain Inferior Temporal Lobe brain
44 chr2:54137200-54146600 Weak transcription H9 Cell Line embryonic stem cell
45 chr2:54137400-54144600 Weak transcription Stomach Smooth Muscle stomach
46 chr2:54137400-54145000 Weak transcription Duodenum Smooth Muscle Duodenum
47 chr2:54137400-54145000 Weak transcription Skeletal Muscle Male skeletal muscle
48 chr2:54137600-54144800 Weak transcription Cortex derived primary cultured neurospheres brain
49 chr2:54137800-54144800 Weak transcription Rectal Mucosa Donor 29 rectum
50 chr2:54137800-54145600 Weak transcription Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015