Variant report

Variant	rs17045466
Chromosome Location	chr1:217366425-217366426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11117829	0.82[EUR][1000 genomes]
rs12074270	0.82[EUR][1000 genomes]
rs12096476	0.82[EUR][1000 genomes]
rs12406684	0.85[EUR][1000 genomes]
rs12755951	0.92[ASN][1000 genomes]
rs1502347	0.95[ASN][1000 genomes]
rs17045679	1.00[JPT][hapmap]
rs35137187	0.91[ASN][1000 genomes]
rs4846820	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4846823	0.93[JPT][hapmap]
rs6669865	0.92[ASN][1000 genomes]
rs6682416	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7527574	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7549926	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549207	chr1:217333272-217455903	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1003559	chr1:217354095-217418732	Enhancers Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217366000-217367000	Enhancers	Fetal Intestine Large	intestine
2	chr1:217366000-217367200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:217366400-217367000	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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