Variant report

Variant	rs17045857
Chromosome Location	chr2:54618361-54618362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10084337	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11892709	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13428236	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17045859	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17045866	0.88[EUR][1000 genomes]
rs35821147	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003205	chr2:54220049-54700843	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv2762639	chr2:54220049-54700855	Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1011790	chr2:54220049-54714553	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1002891	chr2:54227005-54682169	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv535722	chr2:54227005-54682169	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv1011690	chr2:54255361-54700843	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv532512	chr2:54453210-54630755	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54615400-54621800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:54615400-54623000	Weak transcription	Lung	lung
3	chr2:54615400-54643000	Weak transcription	Right Ventricle	heart
4	chr2:54615600-54618400	Weak transcription	Right Atrium	heart
5	chr2:54615600-54621400	Weak transcription	Osteobl	bone
6	chr2:54615600-54627800	Weak transcription	Ovary	ovary
7	chr2:54615800-54621400	Weak transcription	NHDF-Ad	bronchial
8	chr2:54615800-54621800	Weak transcription	NHLF	lung
9	chr2:54616600-54618400	Enhancers	Brain Substantia Nigra	brain
10	chr2:54616600-54618600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr2:54616800-54618600	Enhancers	Brain Hippocampus Middle	brain
12	chr2:54617400-54618400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:54617800-54618600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:54617800-54618600	Enhancers	Left Ventricle	heart
15	chr2:54617800-54618600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr2:54618000-54618600	Enhancers	Rectal Smooth Muscle	rectum
17	chr2:54618200-54618400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr2:54618200-54618600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr2:54618200-54618600	Enhancers	Fetal Brain Male	brain
20	chr2:54618200-54618800	Enhancers	Adipose Nuclei	Adipose
21	chr2:54618200-54620000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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