Variant report

Variant	rs17045872
Chromosome Location	chr2:54646517-54646518
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:54629042..54631678-chr2:54646319..54649301,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10197675	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10200277	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10200373	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13410583	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13417725	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13422533	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17045876	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17045879	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17045894	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs5027315	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55820245	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55988726	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57310962	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58805636	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59072058	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72911198	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72911200	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7574815	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7575035	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7587404	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7589057	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003205	chr2:54220049-54700843	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv2762639	chr2:54220049-54700855	Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1011790	chr2:54220049-54714553	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1002891	chr2:54227005-54682169	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv535722	chr2:54227005-54682169	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv1011690	chr2:54255361-54700843	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54618600-54647200	Weak transcription	Left Ventricle	heart
2	chr2:54631200-54647000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr2:54637600-54646600	Weak transcription	Brain Substantia Nigra	brain
4	chr2:54639400-54657200	Weak transcription	Brain Anterior Caudate	brain
5	chr2:54641200-54647800	Enhancers	HUVEC	blood vessel
6	chr2:54641800-54647600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr2:54644000-54646600	Weak transcription	Fetal Lung	lung
8	chr2:54644000-54646600	Weak transcription	NHLF	lung
9	chr2:54644000-54647000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:54644000-54648000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:54644000-54648000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr2:54644000-54649200	Weak transcription	Spleen	Spleen
13	chr2:54644200-54647200	Weak transcription	Ovary	ovary
14	chr2:54644400-54647200	Weak transcription	Lung	lung
15	chr2:54644400-54647200	Weak transcription	Right Atrium	heart
16	chr2:54644400-54647200	Weak transcription	Right Ventricle	heart
17	chr2:54644400-54647400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr2:54645400-54646600	Weak transcription	Adipose Nuclei	Adipose
19	chr2:54645600-54646600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr2:54645600-54646800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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