Variant report

Variant	rs17046484
Chromosome Location	chr2:55136526-55136527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10167789	0.87[EUR][1000 genomes]
rs13382720	0.89[CEU][hapmap]
rs13388498	1.00[ASN][1000 genomes]
rs6747423	0.87[EUR][1000 genomes]
rs7355428	1.00[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55095200-55148200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr2:55132000-55136600	Enhancers	Liver	Liver
3	chr2:55132000-55140600	Weak transcription	Esophagus	oesophagus
4	chr2:55134000-55153800	Weak transcription	Brain Angular Gyrus	brain
5	chr2:55134200-55147600	Weak transcription	Fetal Brain Female	brain
6	chr2:55134400-55153600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:55135200-55137800	Enhancers	NHDF-Ad	bronchial
8	chr2:55135600-55136800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:55135600-55136800	Enhancers	Psoas Muscle	Psoas
10	chr2:55135600-55136800	Enhancers	Osteobl	bone
11	chr2:55135600-55137000	Enhancers	NHLF	lung
12	chr2:55135600-55138000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:55135800-55136600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr2:55135800-55136600	Enhancers	NH-A	brain
15	chr2:55135800-55136800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:55136200-55140400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:55136200-55145600	Weak transcription	HepG2	liver
18	chr2:55136400-55136600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:55136400-55136800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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