Variant report

Variant	rs17046580
Chromosome Location	chr4:166431563-166431564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1914831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914832	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914851	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73861022	0.81[EUR][1000 genomes]
rs7690815	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9684140	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508327	chr4:166424440-166475679	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166420800-166433400	Weak transcription	Brain Germinal Matrix	brain
2	chr4:166421400-166433200	Weak transcription	Fetal Brain Male	brain
3	chr4:166422000-166433200	Weak transcription	Fetal Brain Female	brain
4	chr4:166428400-166433400	Weak transcription	Fetal Lung	lung
5	chr4:166429000-166433800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:166429200-166438000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:166429400-166431600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:166429800-166433600	Weak transcription	Hela-S3	cervix
9	chr4:166430200-166431600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:166430400-166431600	Enhancers	Adipose Nuclei	Adipose
11	chr4:166430400-166432000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:166431000-166432000	Enhancers	Fetal Stomach	stomach
13	chr4:166431200-166435200	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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