Variant report

Variant	rs17046647
Chromosome Location	chr2:55296816-55296817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10496037	1.00[GIH][hapmap];0.91[TSI][hapmap]
rs11892071	0.81[JPT][hapmap]
rs12465266	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12469804	0.94[GIH][hapmap];0.83[TSI][hapmap]
rs12477141	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12479310	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1348528	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1822618	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60825248	0.82[EUR][1000 genomes]
rs7582359	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874155	chr2:55205262-55307646	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55293000-55298400	Weak transcription	K562	blood
2	chr2:55296000-55297400	Enhancers	Fetal Heart	heart
3	chr2:55296800-55297000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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