Variant report

Variant	rs17046978
Chromosome Location	chr3:67840240-67840241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17046867	1.00[AMR][1000 genomes]
rs57714362	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv963516	chr3:67834282-67843336	ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67839200-67840600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:67839200-67840600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:67839600-67840400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:67839800-67840600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:67840200-67840600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:67840200-67840600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr3:67840200-67841200	Enhancers	Primary T cells from cord blood	blood
8	chr3:67840200-67841200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr3:67840200-67841200	Enhancers	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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