Variant report

Variant	rs17047713
Chromosome Location	chr2:56486723-56486724
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17047732	0.85[AMR][1000 genomes]
rs72923450	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72923464	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72923465	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56473000-56487200	Weak transcription	HSMM	muscle
2	chr2:56477200-56487400	Weak transcription	Psoas Muscle	Psoas
3	chr2:56486600-56487800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr2:56486600-56505000	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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