Variant report
| Variant | rs17047958 |
|---|---|
| Chromosome Location | chr2:56686228-56686229 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10490406 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17047944 | 0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17047947 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17047974 | 0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17048045 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17048048 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17048053 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17048070 | 0.85[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17048080 | 0.86[ASN][1000 genomes] |
| rs17048081 | 0.85[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17190247 | 0.85[CHB][hapmap] |
| rs17190254 | 0.82[CHB][hapmap] |
| rs55773010 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57137764 | 0.93[ASN][1000 genomes] |
| rs59437416 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60081466 | 0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6717117 | 1.00[ASN][1000 genomes] |
| rs6738570 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73940703 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73940706 | 0.85[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs73940709 | 0.85[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs73940710 | 0.85[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs73942443 | 0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73942455 | 0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73942456 | 0.93[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7600769 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834093 | chr2:56538097-56708677 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv1004449 | chr2:56538460-56715861 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv874171 | chr2:56545845-56727178 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv874172 | chr2:56638856-56811749 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv2757800 | chr2:56659685-56851198 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | esv2759052 | chr2:56659685-56851198 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:56684400-56687200 | Weak transcription | Fetal Heart | heart |
| 2 | chr2:56686000-56686800 | Enhancers | Adipose Nuclei | Adipose |
