Variant report
Variant | rs17047975 |
---|---|
Chromosome Location | chr2:56688397-56688398 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10167140 | 0.80[EUR][1000 genomes] |
rs10174072 | 0.91[EUR][1000 genomes] |
rs10185338 | 0.80[EUR][1000 genomes] |
rs10206333 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs1030329 | 0.80[EUR][1000 genomes] |
rs1030331 | 0.80[EUR][1000 genomes] |
rs1030332 | 0.80[EUR][1000 genomes] |
rs12328196 | 0.80[EUR][1000 genomes] |
rs12329032 | 0.83[EUR][1000 genomes] |
rs12467587 | 0.80[EUR][1000 genomes] |
rs12475721 | 0.80[EUR][1000 genomes] |
rs12477024 | 0.80[EUR][1000 genomes] |
rs13387787 | 0.80[EUR][1000 genomes] |
rs13391512 | 0.80[EUR][1000 genomes] |
rs13403280 | 0.80[EUR][1000 genomes] |
rs13416950 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs13418520 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13430592 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs4672124 | 0.80[EUR][1000 genomes] |
rs4672125 | 0.80[EUR][1000 genomes] |
rs4672126 | 0.80[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv834093 | chr2:56538097-56708677 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
2 | nsv1004449 | chr2:56538460-56715861 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv874171 | chr2:56545845-56727178 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv874172 | chr2:56638856-56811749 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | esv2757800 | chr2:56659685-56851198 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
6 | esv2759052 | chr2:56659685-56851198 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:56687200-56688400 | Enhancers | Liver | Liver |