Variant report

Variant	rs17048421
Chromosome Location	chr2:57039200-57039201
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17048291	1.00[EUR][1000 genomes]
rs17048313	1.00[EUR][1000 genomes]
rs17048317	1.00[EUR][1000 genomes]
rs17048324	1.00[EUR][1000 genomes]
rs17048325	1.00[EUR][1000 genomes]
rs56184699	1.00[EUR][1000 genomes]
rs56292729	1.00[EUR][1000 genomes]
rs58486220	1.00[EUR][1000 genomes]
rs59083560	1.00[AMR][1000 genomes]
rs6716890	1.00[EUR][1000 genomes]
rs73940758	1.00[EUR][1000 genomes]
rs73940763	1.00[EUR][1000 genomes]
rs73940765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008859	chr2:56767452-57126026	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535726	chr2:56767452-57126026	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv582059	chr2:56892585-57175087	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv535727	chr2:56895497-57059359	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1007347	chr2:56904928-57100439	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv582060	chr2:56941668-57137622	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1002180	chr2:57019964-57130245	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:57034600-57039200	Weak transcription	Hela-S3	cervix
2	chr2:57035400-57039600	Weak transcription	A549	lung
3	chr2:57039000-57040400	Enhancers	NHEK	skin
4	chr2:57039200-57039400	Enhancers	Hela-S3	cervix
5	chr2:57039200-57040400	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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