Variant report
Variant | rs17049283 |
---|---|
Chromosome Location | chr2:58212153-58212154 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12105064 | 1.00[ASN][1000 genomes] |
rs17049289 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes] |
rs17049290 | 0.88[YRI][hapmap] |
rs17049341 | 1.00[ASN][1000 genomes] |
rs17049342 | 1.00[ASN][1000 genomes] |
rs17049343 | 1.00[ASN][1000 genomes] |
rs17049344 | 1.00[ASN][1000 genomes] |
rs17049345 | 1.00[ASN][1000 genomes] |
rs17049353 | 1.00[ASN][1000 genomes] |
rs17049355 | 1.00[ASN][1000 genomes] |
rs17049364 | 1.00[ASN][1000 genomes] |
rs2312146 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes] |
rs6739344 | 1.00[ASN][1000 genomes] |
rs72947177 | 0.89[AFR][1000 genomes] |
rs72947186 | 0.95[AFR][1000 genomes] |
rs72947188 | 0.95[AFR][1000 genomes] |
rs72947190 | 0.95[AFR][1000 genomes] |
rs72947193 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs72947197 | 0.90[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs72949103 | 0.95[AFR][1000 genomes] |
rs72949105 | 0.95[AFR][1000 genomes] |
rs72951065 | 1.00[ASN][1000 genomes] |
rs72951066 | 1.00[ASN][1000 genomes] |
rs72953108 | 1.00[ASN][1000 genomes] |
rs7566805 | 1.00[ASN][1000 genomes] |
rs7569184 | 1.00[ASN][1000 genomes] |
rs7579768 | 1.00[ASN][1000 genomes] |
rs7587962 | 1.00[ASN][1000 genomes] |
rs7588018 | 1.00[ASN][1000 genomes] |
rs7601556 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv874196 | chr2:57946148-58220320 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | nsv834159 | chr2:58101262-58283655 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
3 | nsv525988 | chr2:58161520-58427786 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
4 | nsv874200 | chr2:58163178-58262016 | Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv458041 | chr2:58196110-58237724 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
6 | nsv582096 | chr2:58196110-58237724 | ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:58201000-58212200 | Weak transcription | Primary B cells from cord blood | blood |
2 | chr2:58209600-58214800 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
3 | chr2:58209600-58214800 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |