Variant report

Variant	rs17049284
Chromosome Location	chr2:58217164-58217165
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12470403	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs12476222	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs1401101	0.85[YRI][hapmap]
rs1518397	0.92[YRI][hapmap];0.90[AFR][1000 genomes]
rs1518398	0.91[YRI][hapmap];0.90[AFR][1000 genomes]
rs1607378	0.90[AFR][1000 genomes]
rs17049273	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs17049278	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs17049282	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs34821621	0.90[AFR][1000 genomes]
rs55786752	0.85[AFR][1000 genomes]
rs56136700	0.87[AFR][1000 genomes]
rs58995859	0.90[AFR][1000 genomes]
rs72808481	0.85[AFR][1000 genomes]
rs72808482	0.85[AFR][1000 genomes]
rs72808484	0.85[AFR][1000 genomes]
rs72808485	0.85[AFR][1000 genomes]
rs72808490	0.90[AFR][1000 genomes]
rs72808491	0.89[AFR][1000 genomes]
rs7558693	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874196	chr2:57946148-58220320	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv834159	chr2:58101262-58283655	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv525988	chr2:58161520-58427786	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv874200	chr2:58163178-58262016	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv458041	chr2:58196110-58237724	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv582096	chr2:58196110-58237724	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv999591	chr2:58214871-58316147	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58217000-58217600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:58217000-58217600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr2:58217000-58217800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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