Variant report

Variant	rs17049431
Chromosome Location	chr2:58477183-58477184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:58470992..58473115-chr2:58475772..58478288,2	K562	blood:
2	chr2:58465119..58467411-chr2:58475928..58478281,2	K562	blood:
3	chr2:58470871..58473115-chr2:58475772..58477795,2	K562	blood:
4	chr2:58475275..58477327-chr2:58514997..58517275,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10178325	0.93[ASN][1000 genomes]
rs10490253	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13417865	0.89[ASN][1000 genomes]
rs13418724	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13421853	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17049381	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17049396	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17049403	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17049406	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17049408	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17049420	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17049422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs28588526	0.91[ASN][1000 genomes]
rs28668929	0.98[ASN][1000 genomes]
rs57033851	0.95[ASN][1000 genomes]
rs57344611	0.86[ASN][1000 genomes]
rs58059919	0.95[ASN][1000 genomes]
rs60176808	0.95[ASN][1000 genomes]
rs62140034	0.89[ASN][1000 genomes]
rs62140040	0.93[ASN][1000 genomes]
rs62140041	0.93[ASN][1000 genomes]
rs62140043	0.91[ASN][1000 genomes]
rs62140045	0.91[ASN][1000 genomes]
rs62140046	0.91[ASN][1000 genomes]
rs62140047	0.95[ASN][1000 genomes]
rs62140048	0.98[ASN][1000 genomes]
rs62140049	0.95[ASN][1000 genomes]
rs62140050	0.95[ASN][1000 genomes]
rs62140051	0.95[ASN][1000 genomes]
rs62141871	0.95[ASN][1000 genomes]
rs72810371	0.93[ASN][1000 genomes]
rs72810375	0.91[ASN][1000 genomes]
rs72810377	0.91[ASN][1000 genomes]
rs72810378	0.91[ASN][1000 genomes]
rs72810393	0.93[ASN][1000 genomes]
rs72810396	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999042	chr2:58326123-58530903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv535734	chr2:58326123-58530903	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1007527	chr2:58386271-58477536	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv535735	chr2:58386271-58477536	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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