Variant report
| Variant | rs1704998 |
|---|---|
| Chromosome Location | chr6:33204861-33204862 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr6:33204726-33204923 | A549 | lung: | n/a | chr6:33204814-33204825 |
| 2 | CEBPB | chr6:33204742-33204912 | IMR90 | lung: | n/a | chr6:33204814-33204825 |
| 3 | CEBPB | chr6:33204706-33204872 | K562 | blood: | n/a | chr6:33204814-33204825 |
| 4 | CEBPB | chr6:33204702-33204908 | HepG2 | liver: | n/a | chr6:33204814-33204825 |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:33174862..33176597-chr6:33203264..33206126,2 | MCF-7 | breast: | |
| 2 | chr6:33168557..33171052-chr6:33204301..33205989,2 | MCF-7 | breast: | |
| 3 | chr6:33204555..33207456-chr6:33217202..33219174,2 | MCF-7 | breast: | |
| 4 | chr6:33174901..33176879-chr6:33204635..33207370,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000223457 | TF binding region |
| ENSG00000204227 | Chromatin interaction |
| ENSG00000204231 | Chromatin interaction |
| ENSG00000112473 | Chromatin interaction |
| ENSG00000199036 | Chromatin interaction |
| ENSG00000232940 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:2)
| rs_ID | r2[population] |
|---|---|
| rs1704997 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs465151 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv462893 | chr6:33142539-33256471 | Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 104 gene(s) | inside rSNPs | diseases |
| 2 | nsv602830 | chr6:33142539-33256471 | Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 104 gene(s) | inside rSNPs | diseases |
| 3 | nsv830634 | chr6:33161217-33330745 | Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 139 gene(s) | inside rSNPs | diseases |
| 4 | nsv462894 | chr6:33174783-33254665 | Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 87 gene(s) | inside rSNPs | diseases |
| 5 | nsv602831 | chr6:33174783-33254665 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 87 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
