Variant report

Variant	rs17050023
Chromosome Location	chr2:59478504-59478505
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17050016	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17050028	1.00[CEU][hapmap];0.94[AMR][1000 genomes]
rs17050064	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57535952	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72806278	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7566608	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834170	chr2:59436676-59604794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:59477600-59478600	Enhancers	Fetal Brain Male	brain
2	chr2:59477800-59483400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr2:59478000-59480200	Weak transcription	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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