Variant report

Variant	rs17050067
Chromosome Location	chr4:120023647-120023648
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:120014220..120018464-chr4:120020403..120024000,3	MCF-7	breast:
2	chr4:120021896..120024544-chr4:120027887..120030777,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17050052	0.90[AMR][1000 genomes]
rs17050056	1.00[MEX][hapmap];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv1007214	chr4:120007913-120112460	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1008115	chr4:120007913-120143849	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv1003827	chr4:120008227-120112460	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv522386	chr4:120009147-120115379	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1012868	chr4:120014630-120464880	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
8	nsv537232	chr4:120014630-120464880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
9	nsv1007619	chr4:120014898-120112460	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120014800-120045000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:120015000-120027800	Weak transcription	Right Atrium	heart
3	chr4:120017000-120027600	Weak transcription	Left Ventricle	heart
4	chr4:120019400-120025000	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:120020600-120024600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:120020800-120023800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:120020800-120024000	Weak transcription	Osteobl	bone
8	chr4:120020800-120024400	Weak transcription	Adipose Nuclei	Adipose
9	chr4:120021000-120023800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:120021000-120023800	Weak transcription	HSMM	muscle
11	chr4:120021000-120023800	Weak transcription	HSMMtube	muscle
12	chr4:120021000-120024400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:120021600-120026400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr4:120022000-120024400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr4:120022200-120023800	Weak transcription	NHDF-Ad	bronchial
16	chr4:120022200-120024800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr4:120022200-120027800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr4:120022400-120025200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:120022600-120023800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr4:120022600-120023800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr4:120022800-120028200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:120022800-120028200	Enhancers	NHEK	skin
23	chr4:120023000-120024400	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr4:120023000-120024400	Enhancers	HMEC	breast
25	chr4:120023000-120026400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr4:120023000-120028200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr4:120023200-120024200	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr4:120023200-120025000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr4:120023200-120025400	Enhancers	NH-A	brain
30	chr4:120023200-120025600	Enhancers	NHLF	lung
31	chr4:120023200-120026200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr4:120023200-120028200	Enhancers	Muscle Satellite Cultured Cells	--
33	chr4:120023200-120028600	Enhancers	HUVEC	blood vessel
34	chr4:120023200-120029400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr4:120023400-120026200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr4:120023600-120024200	Enhancers	Placenta Amnion	Placenta Amnion
37	chr4:120023600-120024800	Enhancers	HepG2	liver
38	chr4:120023600-120025200	Flanking Active TSS	A549	lung
39	chr4:120023600-120026200	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr4:120023600-120028200	Enhancers	Hela-S3	cervix

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