Variant report

Variant	rs17050111
Chromosome Location	chr2:59535533-59535534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13421114	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1344463	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17050107	0.91[EUR][1000 genomes]
rs17050109	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17050114	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55904664	0.94[EUR][1000 genomes]
rs72806283	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72806285	0.91[EUR][1000 genomes]
rs72806286	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73932012	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7585142	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834170	chr2:59436676-59604794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv582099	chr2:59494725-59563744	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1003668	chr2:59523642-59592144	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:59534400-59535800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:59534800-59535800	Enhancers	Primary T cells from cord blood	blood
3	chr2:59534800-59535800	Enhancers	Thymus	Thymus
4	chr2:59534800-59539000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr2:59535000-59535800	Enhancers	Fetal Thymus	thymus
6	chr2:59535200-59535800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:59535400-59535800	Flanking Active TSS	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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