Variant report

Variant	rs17050195
Chromosome Location	chr4:119902255-119902256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119901491..119903376-chr4:120207144..120209665,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12507195	1.00[MEX][hapmap]
rs17050145	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119893600-119902600	Weak transcription	Right Atrium	heart
2	chr4:119896400-119907600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:119896800-119903600	Weak transcription	Right Ventricle	heart
4	chr4:119898400-119902400	Weak transcription	Fetal Stomach	stomach
5	chr4:119900200-119902400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr4:119900600-119902600	Enhancers	Colon Smooth Muscle	Colon
7	chr4:119900600-119903200	Weak transcription	HMEC	breast
8	chr4:119900800-119903200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:119901400-119902400	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr4:119901400-119902600	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:119901400-119902800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:119901400-119903200	Enhancers	Aorta	Aorta
13	chr4:119901400-119903200	Enhancers	Left Ventricle	heart
14	chr4:119901400-119905400	Enhancers	Ovary	ovary
15	chr4:119901400-119907000	Enhancers	Psoas Muscle	Psoas
16	chr4:119901400-119911600	Enhancers	Rectal Smooth Muscle	rectum
17	chr4:119901600-119903800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:119901600-119904600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:119901600-119904600	Enhancers	Osteobl	bone
20	chr4:119901800-119904200	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr4:119902000-119904000	Enhancers	Fetal Heart	heart
22	chr4:119902000-119904400	Enhancers	HSMMtube	muscle
23	chr4:119902000-119904600	Enhancers	NHDF-Ad	bronchial
24	chr4:119902000-119904800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:119902000-119904800	Enhancers	NH-A	brain
26	chr4:119902200-119902600	Enhancers	Stomach Smooth Muscle	stomach
27	chr4:119902200-119902800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr4:119902200-119902800	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr4:119902200-119902800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr4:119902200-119903000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr4:119902200-119903000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr4:119902200-119903000	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr4:119902200-119903000	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr4:119902200-119903400	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr4:119902200-119903600	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr4:119902200-119904200	Enhancers	NHLF	lung
37	chr4:119902200-119904600	Enhancers	HSMM	muscle
38	chr4:119902200-119905800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr4:119902200-119906400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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