Variant report

Variant	rs17050876
Chromosome Location	chr3:49903883-49903884
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:49892951..49895815-chr3:49902687..49904870,2	MCF-7	breast:
2	chr3:49903018..49905123-chr3:49925603..49927642,2	MCF-7	breast:
3	chr3:49902788..49905044-chr3:49906276..49908084,2	K562	blood:
4	chr3:49895516..49897068-chr3:49902453..49904501,2	MCF-7	breast:
5	chr3:49894011..49896487-chr3:49902240..49904028,2	K562	blood:

Variant related genes	Relation type
ENSG00000164076	Chromatin interaction
ENSG00000183763	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs9809001	1.00[AMR][1000 genomes]
rs9843677	0.82[AFR][1000 genomes]
rs9845737	1.00[AMR][1000 genomes]
rs9851837	1.00[AMR][1000 genomes]
rs9862513	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796352	chr3:49687101-49949959	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv834688	chr3:49811115-50019299	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv1809827	chr3:49812331-49934179	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv876766	chr3:49817450-49961780	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49894600-49904200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:49894600-49906400	Weak transcription	Right Atrium	heart
3	chr3:49898400-49905000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:49899000-49904200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:49899000-49904800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:49899800-49904800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:49899800-49905400	Weak transcription	Fetal Intestine Small	intestine
8	chr3:49901000-49905200	Enhancers	Fetal Brain Male	brain
9	chr3:49901600-49906000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr3:49901600-49906400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:49901800-49904000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
12	chr3:49902200-49905400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:49902400-49905400	Active TSS	Brain Anterior Caudate	brain
14	chr3:49902600-49905200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:49902600-49905800	Flanking Active TSS	Fetal Brain Female	brain
16	chr3:49902800-49904000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:49903200-49904600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr3:49903200-49906200	Weak transcription	Gastric	stomach
19	chr3:49903400-49904400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr3:49903400-49904800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr3:49903400-49904800	Active TSS	Brain Germinal Matrix	brain
22	chr3:49903600-49906000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr3:49903800-49904000	Enhancers	Fetal Intestine Large	intestine
24	chr3:49903800-49904800	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr3:49903800-49905000	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr3:49903800-49905800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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