Variant report

Variant	rs17050901
Chromosome Location	chr4:131132532-131132533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10518571	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1542773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542775	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1567371	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17050928	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17050931	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17050946	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17050948	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1971290	0.97[ASN][1000 genomes]
rs4274862	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4605666	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs55776222	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs57043121	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs57488478	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58702883	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs60680183	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs60811828	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72491711	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72491712	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72616387	1.00[EUR][1000 genomes]
rs72616392	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72938552	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72938554	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72938558	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72938568	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72938592	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72938600	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72940530	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7676192	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595416	chr4:130998472-131834405	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2762461	chr4:131004382-131391658	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1025539	chr4:131033276-131728033	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv537253	chr4:131033276-131728033	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv830061	chr4:131064845-131228710	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv879937	chr4:131065136-131174088	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv879938	chr4:131109983-131194571	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1017784	chr4:131115020-131882664	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv537254	chr4:131115020-131882664	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv879939	chr4:131127633-131194571	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv879940	chr4:131127633-131198147	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv879941	chr4:131127633-131200309	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv879942	chr4:131127633-131201900	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv879943	chr4:131127633-131206901	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv879944	chr4:131127633-131212441	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv980477	chr4:131129564-131132630	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:131131600-131132600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:131131600-131133200	Enhancers	NHDF-Ad	bronchial
3	chr4:131131800-131132600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:131131800-131132600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:131131800-131132600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:131131800-131132600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr4:131131800-131132600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:131132200-131132600	Enhancers	Dnd41	blood

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