Variant report

Variant	rs17052467
Chromosome Location	chr13:53481596-53481597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12323047	1.00[EUR][1000 genomes]
rs60532807	0.88[ASN][1000 genomes]
rs61950448	0.88[ASN][1000 genomes]
rs9591475	0.89[EUR][1000 genomes]
rs9591476	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9591478	1.00[EUR][1000 genomes]
rs9596711	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9596712	0.89[EUR][1000 genomes]
rs9596714	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9596715	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv900090	chr13:53429453-53495715	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53476000-53482200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr13:53476200-53482400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr13:53476400-53482000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr13:53476600-53482400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:53476800-53482000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr13:53479400-53482000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr13:53479400-53482200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr13:53480600-53481800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr13:53480800-53481800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr13:53480800-53482000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:53480800-53482200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr13:53481000-53481600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr13:53481000-53482000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
14	chr13:53481000-53482200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr13:53481200-53481600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr13:53481200-53481600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr13:53481400-53482400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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