Variant report

Variant	rs17054095
Chromosome Location	chr8:25502384-25502385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10104885	1.00[AMR][1000 genomes]
rs17054083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2114045	1.00[AMR][1000 genomes]
rs28616039	1.00[AMR][1000 genomes]
rs4467940	1.00[AMR][1000 genomes]
rs4617162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677981	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890689	chr8:25124350-25719075	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv2755872	chr8:25499467-25598598	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:25501400-25503600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr8:25501400-25503600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:25501600-25503600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:25501600-25503600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:25501600-25503600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:25501600-25503600	Enhancers	Fetal Kidney	kidney
7	chr8:25501600-25504000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:25501800-25502600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:25501800-25503200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:25501800-25503400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr8:25501800-25503600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr8:25502000-25503400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr8:25502200-25502400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr8:25502200-25503400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr8:25502200-25503600	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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