Variant report

Variant	rs17054623
Chromosome Location	chr6:101983799-101983800
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2399671	1.00[EUR][1000 genomes]
rs60315344	1.00[EUR][1000 genomes]
rs73502659	1.00[EUR][1000 genomes]
rs73502672	1.00[EUR][1000 genomes]
rs73502688	1.00[EUR][1000 genomes]
rs73504603	1.00[EUR][1000 genomes]
rs73506641	1.00[EUR][1000 genomes]
rs73508695	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538392	chr6:101938381-102148360	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101980000-101983800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:101982600-101983800	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr6:101983000-101986000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:101983000-101987200	Weak transcription	NH-A	brain
5	chr6:101983200-101985800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:101983200-101991400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:101983400-101985200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:101983400-101987400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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