Variant report

Variant	rs17055026
Chromosome Location	chr6:128096318-128096319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1947086	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs269995	1.00[EUR][1000 genomes]
rs270040	1.00[EUR][1000 genomes]
rs270048	1.00[EUR][1000 genomes]
rs58601765	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886639	chr6:127954614-128109244	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv886640	chr6:127961263-128096587	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv886642	chr6:127971136-128096587	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv886643	chr6:127971136-128109244	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv886644	chr6:127976408-128109244	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv886647	chr6:127977160-128109244	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv886648	chr6:127983009-128109244	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128082800-128103000	Weak transcription	Thymus	Thymus
2	chr6:128084400-128103000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:128087400-128099000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr6:128087800-128098600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:128088800-128102800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr6:128089600-128099000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:128089600-128099200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:128090400-128098400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:128090400-128100400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:128090600-128099400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:128095800-128096400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:128095800-128097600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:128095800-128097800	Strong transcription	Primary T cells from cord blood	blood
14	chr6:128096000-128097600	Strong transcription	Fetal Thymus	thymus
15	chr6:128096200-128097000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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