Variant report

Variant	rs17055267
Chromosome Location	chr6:128399088-128399089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10046162	0.81[YRI][hapmap]
rs73584644	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7751946	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv604643	chr6:128359362-128493991	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604644	chr6:128394889-128486139	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128289000-128431000	Weak transcription	Psoas Muscle	Psoas
2	chr6:128347000-128405200	Weak transcription	Lung	lung
3	chr6:128350000-128401000	Weak transcription	Small Intestine	intestine
4	chr6:128370000-128412600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:128372400-128412200	Weak transcription	Placenta	Placenta
6	chr6:128374600-128419400	Weak transcription	Esophagus	oesophagus
7	chr6:128375000-128419400	Weak transcription	Gastric	stomach
8	chr6:128375000-128433800	Weak transcription	Aorta	Aorta
9	chr6:128375600-128413000	Weak transcription	Colonic Mucosa	Colon
10	chr6:128377800-128403400	Weak transcription	Fetal Kidney	kidney
11	chr6:128379000-128432800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:128379400-128412200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:128385800-128406400	Weak transcription	Primary T cells from cord blood	blood
14	chr6:128385800-128419400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:128388600-128403000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:128388600-128412800	Weak transcription	Fetal Lung	lung
17	chr6:128388800-128407800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:128388800-128411600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:128389000-128409800	Weak transcription	Thymus	Thymus
20	chr6:128389000-128411400	Weak transcription	Adipose Nuclei	Adipose
21	chr6:128389000-128412800	Weak transcription	NHLF	lung
22	chr6:128389000-128419400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:128389000-128419400	Weak transcription	Pancreas	Pancrea
24	chr6:128389400-128399200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:128389400-128399800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:128389600-128403400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:128389600-128407600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr6:128389600-128409200	Weak transcription	Fetal Intestine Small	intestine
29	chr6:128389600-128409200	Weak transcription	Fetal Stomach	stomach
30	chr6:128389600-128409800	Weak transcription	Ovary	ovary
31	chr6:128389600-128410000	Weak transcription	NHEK	skin
32	chr6:128389600-128410600	Weak transcription	Left Ventricle	heart
33	chr6:128389600-128410800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:128389600-128417600	Weak transcription	Brain Hippocampus Middle	brain
35	chr6:128389600-128418200	Weak transcription	Brain Substantia Nigra	brain
36	chr6:128389600-128419400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:128390200-128412600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:128390600-128403400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:128390800-128403400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr6:128390800-128415000	Weak transcription	NHDF-Ad	bronchial
41	chr6:128390800-128419600	Weak transcription	NH-A	brain
42	chr6:128391200-128403400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:128391600-128402200	Strong transcription	Primary B cells from cord blood	blood
44	chr6:128392400-128400200	Weak transcription	Osteobl	bone
45	chr6:128392800-128405200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:128394400-128399200	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr6:128395400-128417400	Weak transcription	Fetal Heart	heart
48	chr6:128395600-128400200	Strong transcription	HSMM	muscle
49	chr6:128395600-128404800	Weak transcription	Brain Anterior Caudate	brain
50	chr6:128395800-128401600	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links