Variant report

Variant	rs17055737
Chromosome Location	chr6:128656891-128656892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17055563	1.00[AMR][1000 genomes]
rs17055598	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[AMR][1000 genomes]
rs17055628	0.85[YRI][hapmap]
rs17055630	0.82[YRI][hapmap]
rs17055694	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055702	1.00[AMR][1000 genomes]
rs17055770	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2039754	1.00[AMR][1000 genomes]
rs9491936	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128632000-128658000	Weak transcription	Ovary	ovary
2	chr6:128632200-128665200	Weak transcription	Gastric	stomach
3	chr6:128635600-128672000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:128639000-128660600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:128639000-128660800	Weak transcription	Small Intestine	intestine
6	chr6:128639800-128659000	Weak transcription	Fetal Stomach	stomach
7	chr6:128640000-128660600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:128641400-128661400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:128641800-128657600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:128642000-128657000	Weak transcription	HepG2	liver
11	chr6:128643400-128659000	Weak transcription	NHEK	skin
12	chr6:128643400-128660600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:128646200-128657000	Weak transcription	Brain Anterior Caudate	brain
14	chr6:128649200-128661400	Weak transcription	Pancreas	Pancrea
15	chr6:128649200-128665600	Weak transcription	Left Ventricle	heart
16	chr6:128649400-128658600	Weak transcription	Fetal Lung	lung
17	chr6:128649400-128659800	Weak transcription	Fetal Intestine Small	intestine
18	chr6:128649400-128660800	Weak transcription	HSMMtube	muscle
19	chr6:128649400-128671800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:128649400-128678600	Weak transcription	HSMM	muscle
21	chr6:128649600-128661600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:128651000-128660400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:128651200-128657800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:128653400-128657600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:128654400-128657400	Weak transcription	Stomach Mucosa	stomach
26	chr6:128654400-128658600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:128654400-128659000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:128654400-128660400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr6:128655000-128657600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:128655000-128658800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:128655200-128657200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr6:128655200-128658800	Weak transcription	Fetal Heart	heart
33	chr6:128655200-128659800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr6:128656200-128659200	Enhancers	Brain Hippocampus Middle	brain
35	chr6:128656200-128660600	Enhancers	Liver	Liver
36	chr6:128656400-128657000	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr6:128656400-128659600	Enhancers	Rectal Smooth Muscle	rectum
38	chr6:128656400-128660000	Enhancers	Brain Substantia Nigra	brain
39	chr6:128656400-128661400	Enhancers	Colon Smooth Muscle	Colon
40	chr6:128656600-128657800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links